Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12096463 chr1:16326918 T/C 2.29E-5 494 31.38 27.13 67.52 KM Plot
PRAD rs12119241 chr1:66221242 A/T 0.000117 488 31.23 28.3 35.67 KM Plot
PRAD rs12121460 chr1:31733926 A/G 7.79E-6 480 22.85 31.62 30.97 KM Plot
PRAD rs12137494 chr1:6578472 G/T 5.5E-5 471 18.43 33.6 29 KM Plot
PRAD rs12140403 chr1:6578402 C/T 5.5E-5 471 18.43 33.6 29 KM Plot
PRAD rs12141899 chr1:6578430 A/G 5.5E-5 471 18.43 33.6 29 KM Plot
PRAD rs12150764 chr18:39470190 C/T 8.62E-5 494 24.63 37.83 29.2 KM Plot
PRAD rs12157484 chr22:18455122 C/T 9.81E-7 494 30.8 31.93 26.87 KM Plot
PRAD rs12158823 chr22:18439420 G/A 9.6E-7 488 30.8 32.22 26.2 KM Plot
PRAD rs12158906 chr22:18437382 A/G 1.19E-6 489 30.8 32.5 26.03 KM Plot
PRAD rs12159837 chr22:18447491 G/A 3.96E-6 493 30.8 31.87 26.58 KM Plot
PRAD rs12186480 chr5:154301917 T/C 0 493 30.27 32.63 4.87 KM Plot
PRAD rs12186610 chr5:154166455 T/G 0 488 30.27 33.27 4.87 KM Plot
PRAD rs12187572 chr5:154260767 C/T 0 494 29.8 35.57 4.87 KM Plot
PRAD rs12187890 chr5:154327143 G/A 5.31E-14 493 30.2 35.57 6.3 KM Plot